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This is the command gt-tallymer-occratio that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-tallymer-occratio - Compute occurrence ratio for a set of sequences represented by an
enhanced suffix array.

SYNOPSIS


gt tallymer occratio [options] -esa suffixerator-index [options]

DESCRIPTION


-esa [string]
specify suffixerator-index (mandatory option) (default: undefined)

-minmersize [value]
specify minimum mer size for which to compute the occurrence distribution (default: 0)

-maxmersize [value]
specify maximum mer size for which to compute the occurrence distribution (default: 0)

-step [value]
specify step size when specifying mer sizes (default: 1)

-mersizes
specify mer sizes as non-empty sequence of non decreasing positive integers

-output
use combination of the following keywords: unique nonunique nonuniquemulti relative
total to specify kind of output

-scan [yes|no]
read suffixerator-index sequentially instead of mapping it to memory (default: no)

-v [yes|no]
be verbose (default: no)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <kurtz@zbh.uni-hamburg.de>.

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