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PROGRAM:

NAME


gt-tallymer-occratio - Compute occurrence ratio for a set of sequences represented by an
enhanced suffix array.

SYNOPSIS


gt tallymer occratio [options] -esa suffixerator-index [options]

DESCRIPTION


-esa [string]
specify suffixerator-index (mandatory option) (default: undefined)

-minmersize [value]
specify minimum mer size for which to compute the occurrence distribution (default: 0)

-maxmersize [value]
specify maximum mer size for which to compute the occurrence distribution (default: 0)

-step [value]
specify step size when specifying mer sizes (default: 1)

-mersizes
specify mer sizes as non-empty sequence of non decreasing positive integers

-output
use combination of the following keywords: unique nonunique nonuniquemulti relative
total to specify kind of output

-scan [yes|no]
read suffixerator-index sequentially instead of mapping it to memory (default: no)

-v [yes|no]
be verbose (default: no)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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