OnWorks favicon

hmm2convert - Online in the Cloud

Run hmm2convert in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command hmm2convert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



hmm2convert - convert between profile HMM file formats


hmm2convert [options] oldhmmfile newhmmfile


hmm2convert reads an HMM file from oldhmmfile in any HMMER format, and writes it to a new
file newhmmfile in a new format. oldhmmfile and newhmmfile must be different files; you
can't reliably overwrite the old file. By default, the new HMM file is written in HMMER 2
ASCII format.

Available formats are HMMER 2 ASCII (default), HMMER 2 binary (-b) GCG profile (-p) , and
Compugen XSW extended profile (-P).


-a Convert to HMMER 2 ASCII file. This is the default, so this option is unnecessary.

-b Convert to HMMER 2 binary file.

-h Print brief help; includes version number and summary of all options, including
expert options.

-p Convert to GCG profile .prf format.

-A Append mode; append to newhmmfile rather than creating a new file.

-F Force; if newhmmfile already exists, and -A is not being used to append to the
file, hmm2convert will refuse to clobber the existing file unless -F is used.

-P Convert the HMM to Compugen XSW extended profile format, which is similar to GCG
profile format but has two extra columns for delete-open and delete-extend costs.
(I do not believe that Compugen publicly supports this format; it may be

Use hmm2convert online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Phaser is a fast, free, and fun open
    source HTML5 game framework that offers
    WebGL and Canvas rendering across
    desktop and mobile web browsers. Games
    can be co...
    Download Phaser
  • 2
    VASSAL Engine
    VASSAL Engine
    VASSAL is a game engine for creating
    electronic versions of traditional board
    and card games. It provides support for
    game piece rendering and interaction,
    Download VASSAL Engine
  • 3
    OpenPDF - Fork of iText
    OpenPDF - Fork of iText
    OpenPDF is a Java library for creating
    and editing PDF files with a LGPL and
    MPL open source license. OpenPDF is the
    LGPL/MPL open source successor of iText,
    Download OpenPDF - Fork of iText
  • 4
    Toolbox for Java/JTOpen
    Toolbox for Java/JTOpen
    The IBM Toolbox for Java / JTOpen is a
    library of Java classes supporting the
    client/server and internet programming
    models to a system running OS/400,
    i5/OS, o...
    Download Toolbox for Java/JTOpen
  • 5
    D3.js (or D3 for Data-Driven Documents)
    is a JavaScript library that allows you
    to produce dynamic, interactive data
    visualizations in web browsers. With D3
    Download D3.js
  • 6
    A fast tunnel proxy that helps you
    bypass firewalls This is an application
    that can also be fetched from
    It ha...
    Download Shadowsocks
  • 7
    GLPI Themes
    GLPI Themes
    Download release at
    Color themes for GLPI 0.84 and 0.85 New
    Modifications for GLPI This is an
    application that c...
    Download GLPI Themes
  • More »

Linux commands