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hmm2convert - Online in the Cloud

Run hmm2convert in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command hmm2convert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


hmm2convert - convert between profile HMM file formats

SYNOPSIS


hmm2convert [options] oldhmmfile newhmmfile

DESCRIPTION


hmm2convert reads an HMM file from oldhmmfile in any HMMER format, and writes it to a new
file newhmmfile in a new format. oldhmmfile and newhmmfile must be different files; you
can't reliably overwrite the old file. By default, the new HMM file is written in HMMER 2
ASCII format.

Available formats are HMMER 2 ASCII (default), HMMER 2 binary (-b) GCG profile (-p) , and
Compugen XSW extended profile (-P).

OPTIONS


-a Convert to HMMER 2 ASCII file. This is the default, so this option is unnecessary.

-b Convert to HMMER 2 binary file.

-h Print brief help; includes version number and summary of all options, including
expert options.

-p Convert to GCG profile .prf format.

-A Append mode; append to newhmmfile rather than creating a new file.

-F Force; if newhmmfile already exists, and -A is not being used to append to the
file, hmm2convert will refuse to clobber the existing file unless -F is used.

-P Convert the HMM to Compugen XSW extended profile format, which is similar to GCG
profile format but has two extra columns for delete-open and delete-extend costs.
(I do not believe that Compugen publicly supports this format; it may be
undocumented.)

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