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hmmconvert - Online in the Cloud

Run hmmconvert in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command hmmconvert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


hmmconvert - convert profile file to a HMMER format

SYNOPSIS


hmmconvert [options] <hmmfile>

DESCRIPTION


The hmmconvert utility converts an input profile file to different HMMER formats.

By default, the input profile can be in any HMMER format, including old/obsolete formats
from HMMER2, ASCII or binary; the output profile is a current HMMER3 ASCII format.

<hmmfile> may be '-' (dash), which means reading this input from stdin rather than a file.

OPTIONS


-h Help; print a brief reminder of command line usage and all available options.

-a Output profiles in ASCII text format. This is the default.

-b Output profiles in binary format.

-2 Output in legacy HMMER2 ASCII text format, in ls (glocal) mode. This allows HMMER3
models to be converted back to a close approximation of HMMER2, for comparative
studies.

--outfmt <s>
Output in a HMMER3 ASCII text format other then the most current one. Valid
choices for <s> are 3/a through 3/f. The current format is 3/f, and this is the
default. The format 3/b was used in the official HMMER3 release, and the others
were used in the various testing versions.

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