EnglishFrenchSpanish

Ad


OnWorks favicon

idconvert - Online in the Cloud

Run idconvert in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command idconvert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


idconvert — Convert mass spectrometry identification file formats.

SYNOPSIS


idconvert [options] [filemasks]

DESCRIPTION


This manual page documents briefly the idconvert software shipped within the libpwiz-tools
package. This program allows one to convert mass spectrometry protein identification data
files from one format to another.

OPTIONS


-v | --verbose
Display detailed processing progress information.

-f | --filelist filename
Uses the contents of filename which lists filenames.

-o | --outdir dir
Set the output directory ('-' for stdout) to dir. By default, the output
directory is '.' (that is, the current working directory).

-c | --config filename
Set the configuration file to filename.

-e | --ext ext
Set the extension of the output files to ext. Can be mzid or pepXML or txt.

--mzIdentML
Write mzIdentML format (default).

--pepXML Write pepXML format.

--text Write hierarchical text format.

EXAMPLES


Convert sequest.pepXML to sequest.mzid

idconvert sequest.pepXML

Convert mascot.mzid to mascot.pepXML

idconvert mascot.mzid --pepXML

Use a configuration file

idconvert xtandem.pep.xml -c config.txt

RETURN VALUE


The number of failed files.

Use idconvert online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    strikr
    strikr
    Strikr Free Software project. Artifacts
    released under a 'intent based'
    dual license: AGPLv3 (community) and
    CC-BY-NC-ND 4.0 international
    (commercial)...
    Download strikr
  • 3
    GIFLIB
    GIFLIB
    giflib is a library for reading and
    writing gif images. It is API and ABI
    compatible with libungif which was in
    wide use while the LZW compression
    algorithm was...
    Download GIFLIB
  • 4
    Alt-F
    Alt-F
    Alt-F provides a free and open source
    alternative firmware for the DLINK
    DNS-320/320L/321/323/325/327L and
    DNR-322L. Alt-F has Samba and NFS;
    supports ext2/3/4...
    Download Alt-F
  • 5
    usm
    usm
    Usm is a unified slackware package
    manager that handles automatic
    dependency resolution. It unifies
    various package repositories including
    slackware, slacky, p...
    Download usm
  • 6
    Chart.js
    Chart.js
    Chart.js is a Javascript library that
    allows designers and developers to draw
    all kinds of charts using the HTML5
    canvas element. Chart js offers a great
    array ...
    Download Chart.js
  • More »

Linux commands

Ad