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khmer - Online in the Cloud

Run khmer in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command khmer that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


khmer - k-mer counting, filtering and graph traversal FTW!

khmer is a library and toolkit for doing k-mer-based dataset analysis and transformations

SYNOPSIS


khmer <prog_name> [options] args

eg.

khmer load-into-counting -x 1e8 -k 20 reads.ct reads.fa.gz

USAGE


This manpage only describes the khmer wrapper script. To find out about the software and
how to use it please see /usr/share/doc/khmer or else http://khmer.readthedocs.org/.

On Debian/Ubuntu, package maintainers avoid putting large collections of scripts directly
into the system PATH. Rather, a single wrapper script is used to launch the script you
want to use; therefore if the khmer instructions say to run load-into-counting.py
...whatever... you need to prefix this command with khmer. Furthermore, the .py extension
may be omitted, resulting in a command of the format shown above.

If you don´t like this, simply add /usr/lib/khmer/bin to your personal PATH.

Use khmer online using onworks.net services


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