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This is the command kmc_tools-union that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


kmc_tools-union - calculate union of two KMC databases

SYNOPSIS


kmc_tools union <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>

DESCRIPTION


The output database will contain all k-mers present in both input sets. For the same
k-mers in the first and the second input, the counter in the output is equal to the sum
from both inputs.

OPTIONS


For each input there are additional parameters:

-ci<value>
exclude k-mers occurring less than <value> times

-cx<value>
exclude k-mers occurring more of than <value> times

For output there are additional parameters:

-ci<value>
exclude k-mers occurring less than <value> times

-cx<value>
exclude k-mers occurring more of than <value> times

-cs<value>
maximal value of a counter

EXAMPLE


kmc -k28 file1.fastq kmers1 tmp kmc -k28 file2.fastq kmers2 tmp kmc_tools union kmers1
-ci3 -cx70000 kmers2 kmers1_kmers2_union -cs65536

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