EnglishFrenchSpanish

Ad


OnWorks favicon

kmc_tools-union - Online in the Cloud

Run kmc_tools-union in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command kmc_tools-union that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


kmc_tools-union - calculate union of two KMC databases

SYNOPSIS


kmc_tools union <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>

DESCRIPTION


The output database will contain all k-mers present in both input sets. For the same
k-mers in the first and the second input, the counter in the output is equal to the sum
from both inputs.

OPTIONS


For each input there are additional parameters:

-ci<value>
exclude k-mers occurring less than <value> times

-cx<value>
exclude k-mers occurring more of than <value> times

For output there are additional parameters:

-ci<value>
exclude k-mers occurring less than <value> times

-cx<value>
exclude k-mers occurring more of than <value> times

-cs<value>
maximal value of a counter

EXAMPLE


kmc -k28 file1.fastq kmers1 tmp kmc -k28 file2.fastq kmers2 tmp kmc_tools union kmers1
-ci3 -cx70000 kmers2 kmers1_kmers2_union -cs65536

Use kmc_tools-union online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    LMMS Digital Audio Workstation
    LMMS Digital Audio Workstation
    LMMS is a free cross-platform software
    which allows you to produce music with
    your computer. If you like this project
    consider getting involved in the project
    h...
    Download LMMS Digital Audio Workstation
  • 2
    FreeRTOS Real Time Kernel (RTOS)
    FreeRTOS Real Time Kernel (RTOS)
    FreeRTOS is a market-leading real-time
    operating system (RTOS) for
    microcontrollers and small
    microprocessors. Distributed freely
    under the MIT open source lice...
    Download FreeRTOS Real Time Kernel (RTOS)
  • 3
    Avogadro
    Avogadro
    Avogadro is an advanced molecular
    editor designed for cross-platform use
    in computational chemistry, molecular
    modeling, bioinformatics, materials
    science and ...
    Download Avogadro
  • 4
    XMLTV
    XMLTV
    XMLTV is a set of programs to process
    TV (tvguide) listings and help manage
    your TV viewing, storing listings in an
    XML-based format. There are utilities to
    do...
    Download XMLTV
  • 5
    strikr
    strikr
    Strikr Free Software project. Artifacts
    released under a 'intent based'
    dual license: AGPLv3 (community) and
    CC-BY-NC-ND 4.0 international
    (commercial)...
    Download strikr
  • 7
    GIFLIB
    GIFLIB
    giflib is a library for reading and
    writing gif images. It is API and ABI
    compatible with libungif which was in
    wide use while the LZW compression
    algorithm was...
    Download GIFLIB
  • More »

Linux commands

Ad