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lastdb - Online in the Cloud

Run lastdb in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command lastdb that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


lastdb - genome-scale comparison of biological sequences

SYNOPSIS


lastdb [options] output-name fasta-sequence-file(s)

DESCRIPTION


Prepare sequences for subsequent alignment with lastal.

OPTIONS


Main Options
-h, --help
show all options and their default settings, and exit

-p interpret the sequences as proteins

-R repeat-marking options (default=10)

-c soft-mask lowercase letters

Advanced Options (default settings)
-Q input format: 0=fasta, 1=fastq-sanger, 2=fastq-solexa, 3=fastq-illumina (0)

-s volume size (unlimited)

-m seed pattern (non-DNA: 1)

-u seeding scheme (DNA: YASS)

-w index step (1)

-a user-defined alphabet

-i minimum limit on initial matches per query position (0)

-b bucket depth

-C child table type: 0=none, 1=byte-size, 2=short-size, 3=full (0)

-x just count sequences and letters

-v be verbose: write messages about what lastdb is doing

-V, --version
show version information, and exit

REPORTING BUGS


Report bugs to: [email protected]
LAST home page: http://last.cbrc.jp/

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