This is the command lastdb that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
lastdb - genome-scale comparison of biological sequences
SYNOPSIS
lastdb [options] output-name fasta-sequence-file(s)
DESCRIPTION
Prepare sequences for subsequent alignment with lastal.
OPTIONS
Main Options
-h, --help
show all options and their default settings, and exit
-p interpret the sequences as proteins
-R repeat-marking options (default=10)
-c soft-mask lowercase letters
Advanced Options (default settings)
-Q input format: 0=fasta, 1=fastq-sanger, 2=fastq-solexa, 3=fastq-illumina (0)
-s volume size (unlimited)
-m seed pattern (non-DNA: 1)
-u seeding scheme (DNA: YASS)
-w index step (1)
-a user-defined alphabet
-i minimum limit on initial matches per query position (0)
-b bucket depth
-C child table type: 0=none, 1=byte-size, 2=short-size, 3=full (0)
-x just count sequences and letters
-v be verbose: write messages about what lastdb is doing
-V, --version
show version information, and exit
REPORTING BUGS
Report bugs to: [email protected]
LAST home page: http://last.cbrc.jp/
Use lastdb online using onworks.net services
