This is the command lav2murasaki.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
lav2murasaki.pl -- convert a LAV file (ie: from Blastz) into a Murasaki set of files
SYNOPSIS
lav2murasaki.pl [options] <input file>
OPTIONS
--ungapped|-u => LAV files have "gapped regions" composed of "ungapped regions". Using
this option creates 1 anchor for each ungapped region (this also provides a .bitscore
file, as each ungapped region contains a percent identity field).
--verbose|-v => More verbose output to stdout. Can be applied up to 3 times (anything
beyond 1 gets messy though, as each anchor gets 1 line of output).
COMMENTS
You and Toadofsky make beautiful music!
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