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mincsample - Online in the Cloud

Run mincsample in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command mincsample that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


mincsample - generate samplings from minc files.

SYNOPSIS


mincsample [<options>] <in1.mnc> [<in2.mnc> [<..>]]

DESCRIPTION


Mincsample produces a data sampling on STDOUT from an input series of minc files. The
output can be either ascii (-ascii) or as a raw binary stream of doubles (-double). The
output data is ordered first by file then voxel. When -ascii is used the data values from
each file are separated by a tab and the sampling points with a newline. When using
-double, no separators are used.

If -coords is also specified, the world co-ordinate at each sampling point will precede
the data from each of the files. An optional -outfile argument can also be used to direct
the output to a file and -append used to append the data to the file as opposed to
overwriting the file.

By default all data points are written out (-all) the output of points can also be
constrained to be points within a mask (-mask and -mask_val) and further by a random
sampling of a sub-set of points via the -random_samples and -random_seed arguments

OPTIONS


-verbose
Print extra information during processing.

-quiet Print only the ouput sampling data.

-clobber
Overwrite existing output files (when used with -outfile)

-max_buffer size
Specify the maximum size of the internal buffers (in kbytes). Default is 4096
(4MB).

-mask mask.mnc
Specify and input mask, only sampling points within this mask will be used.

-mask_val value
Specify the value to use from the mask (Default: 1).

-all Sample all the data points.

-random_seed value
Specify the random seed value to use during random sampling, this is to enable
reproducible runs. If no seed is given a semi-random seed will be chosen (from
time).

-random_samples value
Specify the number of random samples to take from the input files. This value must
be smaller than the maximum possible number of samples.

-sample sample.mnc
Output a mask file that corresponds to where samples were taken from.

-outfile file
Output sampling data to a file. (Default: STDOUT).

-append
Append output data to an existing file.

-ascii Write out data as ascii strings (Default).

-ascii Write out data as double precision floating-point values.

-coords
Write out world co-ordinates as well as sampling values.

-help Print summary of command-line options and exit.

-version
Print the program's version number and exit.

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