EnglishFrenchSpanish

Ad


OnWorks favicon

minctoecat - Online in the Cloud

Run minctoecat in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command minctoecat that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


minctecat - convert a minc format file to an Ecat7 format file

SYNOPSIS


minctoecat [<options>] <infile.mnc> <outfile.v>

minctoecat [-help]

DESCRIPTION


minctoecat will convert a 2D image, a 3D volumes or a 4D dynamic volumes written in minc
file format to a 2D, 3D or 4D Ecat7 file. Whereas the Ecat7 format has been designed for
PET volume issued by Ecat scanners (CTI/SIEMENS - Knoxville, TN, USA) it reads any minc
volume type (static PET, dynamic PET, aMRI, fMRI, labels) natively delivered by any
tomograph brand and transform it to a viable Ecat7 file in term of number of dimensions,
dimension size, dimension step, orientation, spatial position, voxel values and voxel
unit. Furthermore, it tries the best as it can to fill optional Ecat7 header fields from
the available minc variables and attributes. By default, it extracts these additional
information from common minc variables, namely: patient_variable, study_variable,
acquisition_variable. In the case of volumes originally delivered by an Ecat PET scanners,
then, other variable are generally available within the minc header:
ecat_acquisition_variable, ecat_main and ecat_sub-header_variable. There, for a such minc
volume, the conversion yields a Ecat7 volume almost identical to the original native
volume in terms of header fields. The user can alter this behaviour using the ignore-list
options (see the option section).

OPTIONS


Note that options can be specified in abbreviated form (as long as they are unique) and
can be given anywhere on the command line.

Command specific options


-ignore_patient_variable: Ignore information from the minc patient variable (MIpatient).

-ignore_study_variable: Ignore information from the minc study variable (MIstudy).

-ignore_acquisition_variable: Ignore information from the minc acquisition variable
(MIacquisition).

-ignore_ecat_accquisition_variable: Ignore information from the minc ecat acquisition
variable (MIecat_acquisition).

-ignore_ecat_main_variable: Ignore information from the minc ecat-mainheader variable
(MIecat-main).

-ignore_ecat_subheader_variable: Ignore information from the minc ecat-subheader variable
(MIecat-subheader).

-no_decay_corr_fctr: do not regenerate the decay correction factors employed as part as
the reconstruction of the original PET volume. The correction factors is a field in the
ecat sub-headers which can be used by processing programs. By default, if the volume is a
PET volume ,those factors are regenerated. This option has no interest in the case of non
PET data.

-label: Treats voxel as integer values instead of floating point values. In this case, the
scale factors and the calibration factors are both set to unity. This option is
particularly useful when the input minc files is a volume of labels.

General options


-help: Print summary of command-line options and abort

-version: Print the program's version and abort

KNOWN BUGS


No bug listed so far :=)

Use minctoecat online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    turkdevops
    turkdevops
    TurkDevOps a�?k kaynak yaz?l?m
    geli?tirici topluluklar? DevTurks-Team
    Taraf?ndan desteklenmektedir..
    Features:https://github.com/turkdevopshttps://turkdevops.g...
    Download turkdevops
  • 2
    asammdf
    asammdf
    *asammdf* is a fast Python parser and
    editor for ASAM (Associtation for
    Standardisation of Automation and
    Measuring Systems) MDF / MF4
    (Measurement Data Format...
    Download asammdf
  • 3
    LAME (Lame Aint an MP3 Encoder)
    LAME (Lame Aint an MP3 Encoder)
    LAME is an educational tool to be used
    for learning about MP3 encoding. The
    goal of the LAME project is to improve
    the psycho acoustics, quality and speed
    of MP...
    Download LAME (Lame Aint an MP3 Encoder)
  • 4
    wxPython
    wxPython
    A set of Python extension modules that
    wrap the cross-platform GUI classes from
    wxWidgets.. Audience: Developers. User
    interface: X Window System (X11), Win32 ...
    Download wxPython
  • 5
    packfilemanager
    packfilemanager
    This is the Total War pack file manager
    project, starting from version 1.7. A
    short introduction into Warscape
    modding: ...
    Download packfilemanager
  • 6
    IPerf2
    IPerf2
    A network traffic tool for measuring
    TCP and UDP performance with metrics
    around both throughput and latency. The
    goals include maintaining an active
    iperf cod...
    Download IPerf2
  • More »

Linux commands

Ad