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PROGRAM:

NAME


mlpack_sparse_coding - sparse coding

SYNOPSIS


mlpack_sparse_coding [-h] [-v] [-k int] [-c string] [-d string] [-i string] [-m string] [-l double] [-L double] [-n int] [-w double] [-N] [-o double] [-M string] [-s int] [-T string] [-t string] -V

DESCRIPTION


An implementation of Sparse Coding with Dictionary Learning, which achieves sparsity via
an l1-norm regularizer on the codes (LASSO) or an (l1+l2)-norm regularizer on the codes
(the Elastic Net). Given a dense data matrix X with n points and d dimensions, sparse
coding seeks to find a dense dictionary matrix D with k atoms in d dimensions, and a
sparse coding matrix Z with n points in k dimensions.

The original data matrix X can then be reconstructed as D * Z. Therefore, this program
finds a representation of each point in X as a sparse linear combination of atoms in the
dictionary D.

The sparse coding is found with an algorithm which alternates between a dictionary step,
which updates the dictionary D, and a sparse coding step, which updates the sparse coding
matrix.

Once a dictionary D is found, the sparse coding model may be used to encode other
matrices, and saved for future usage.

To run this program, either an input matrix or an already-saved sparse coding model must
be specified. An input matrix may be specified with the --training_file (-t) option, along
with the number of atoms in the dictionary (--atoms, or -k). It is also possible to
specify an initial dictionary for the optimization, with the --initial_dictionary (-i)
option. An input model may be specified with the --input_model_file (-m) option. There are
also other training options available.

As an example, to build a sparse coding model on the dataset in data.csv using 200 atoms
and an l1-regularization parameter of 0.1, saving the model into model.xml, use

$ sparse_coding -t data.csv -k 200 -l 0.1 -M model.xml

Then, this model could be used to encode a new matrix, otherdata.csv, and save the output
codes to codes.csv:

$ sparse_coding -m model.xml -T otherdata.csv -c codes.csv

OPTIONS


--atoms (-k) [int]
Number of atoms in the dictionary. Default value 0.

--codes_file (-c) [string]
Filename to save the output sparse codes to. Default value ''. --dictionary_file
(-d) [string] Filename to save the output dictionary to. Default value ''.

--help (-h)
Default help info.

--info [string]
Get help on a specific module or option. Default value ''. --initial_dictionary
(-i) [string] Filename for optional initial dictionary. Default value ''.
--input_model_file (-m) [string] File containing input sparse coding model.
Default value ''.

--lambda1 (-l) [double]
Sparse coding l1-norm regularization parameter. Default value 0.

--lambda2 (-L) [double]
Sparse coding l2-norm regularization parameter. Default value 0.

--max_iterations (-n) [int]
Maximum number of iterations for sparse coding (0 indicates no limit). Default
value 0. --newton_tolerance (-w) [double] Tolerance for convergence of Newton
method. Default value 1e-06.

--normalize (-N)
If set, the input data matrix will be normalized before coding.
--objective_tolerance (-o) [double] Tolerance for convergence of the objective
function. Default value 0.01. --output_model_file (-M) [string] File to save
trained sparse coding model to. Default value ''.

--seed (-s) [int]
Random seed. If 0, 'std::time(NULL)' is used. Default value 0.

--test_file (-T) [string]
File containing data matrix to be encoded by trained model. Default value ''.
--training_file (-t) [string] Filename of the training data (X). Default value ''.

--verbose (-v)
Display informational messages and the full list of parameters and timers at the
end of execution.

--version (-V)
Display the version of mlpack.

ADDITIONAL INFORMATION


ADDITIONAL INFORMATION


For further information, including relevant papers, citations, and theory, For further
information, including relevant papers, citations, and theory, consult the documentation
found at http://www.mlpack.org or included with your consult the documentation found at
http://www.mlpack.org or included with your DISTRIBUTION OF MLPACK. DISTRIBUTION OF
MLPACK.

mlpack_sparse_coding(1)

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