This is the command parsinsert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
ParsInsert - Parsimonious Insertion of unclassified sequences into phylogenetic tree
DESCRIPTION
parsinsert [options] <insert_sequences>
Perform Insertion of Sequences into Given Tree
-m <mask file> - read mask from this file
-s <tree sequences> - read core tree sequences from this file
(default: PI_Tree.fasta)
-t <tree file> - read core tree from this file
(default: PI_Tree.tree)
-x <tree taxonomy> - read core tree taxomony from this file
-o <output file> - output taxonomy for each insert sequence to this file
(default: PI_Results.log)
-l [-|<log file>] - create log file (default is ParsInsert.log)
-n# - number of best matches to display
-c# - percent threshold cutoff
-p - print node comments in newick file
-D# - print branch lengths using # decimal places tree sequence file:
PI_Tree.fasta
Use parsinsert online using onworks.net services
