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prophecye - Online in the Cloud

Run prophecye in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command prophecye that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


prophecy - Create frequency matrix or profile from a multiple alignment

SYNOPSIS


prophecy -sequence seqset -type list -datafile matrixf -name string -threshold integer
-open float -extension float -outfile outfile

prophecy -help

DESCRIPTION


prophecy is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:Profiles,Protein:Profiles" command group(s).

OPTIONS


Input section
-sequence seqset

-type list
Default value: F

-datafile matrixf
Default value: @($(type) = G: Epprofile H: EBLOSUM62 F: EBLOSUM62)

Required section
-name string
Default value: mymatrix

Profile type specific options
-threshold integer
Default value: 75

Gap options
-open float
Default value: 3.0

-extension float
Default value: 0.3

Output section
-outfile outfile

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