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This is the command r.li.shannongrass that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


r.li.shannon - Calculates Shannon’s diversity index on a raster map

KEYWORDS


raster, landscape structure analysis, diversity index

SYNOPSIS


r.li.shannon
r.li.shannon --help
r.li.shannon input=name config=name output=name [--overwrite] [--help] [--verbose]
[--quiet] [--ui]

Flags:
--overwrite
Allow output files to overwrite existing files

--help
Print usage summary

--verbose
Verbose module output

--quiet
Quiet module output

--ui
Force launching GUI dialog

Parameters:
input=name [required]
Name of input raster map

config=name [required]
Configuration file

output=name [required]
Name for output raster map

DESCRIPTION


r.li.shannon calculates the "Shannon’s diversity index" as:
with:

· i: patch type

· m: number of different patch types

· pi: proportional abundance of patch type i

NOTES


Do not use absolute path names for the config and output file/map parameters. If the
"moving window" method was selected in g.gui.rlisetup, then the output will be a raster
map, otherwise an ASCII file will be generated in the folder
C:\Users\userxy\AppData\Roaming\GRASS7\r.li\output\ (MS-Windows) or
$HOME/.grass7/r.li/output/ (GNU/Linux).

If the input raster map contains only NULL values then r.li.shannon returns NULL.

EXAMPLES


To calculate Shannon’s diversity index on map my_map, using my_conf configuration file
(previously defined with g.gui.rlisetup) and saving results in my_out, run:
r.li.shannon input=my_map conf=my_conf output=my_out

Forest map (Spearfish sample dataset) example:
g.region raster=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.shannon input=forests conf=movwindow7 out=forests_shannon_mov7
r.univar forests_shannon_mov7

Forest map (North Carolina sample dataset) example:
g.region raster=landclass96 -p
r.mapcalc "forests = if(landclass96 == 5, 1, null() )"
r.li.shannon input=forests conf=movwindow7 out=forests_shannon_mov7
# verify
r.univar forests_shannon_mov7
r.to.vect input=forests output=forests type=area
d.mon wx0
d.rast forests_shannon_mov7
d.vect forests type=boundary

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