This is the command scftool that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
scftool - provides a set of tools useful when working with SCF trace files.
SYNOPSIS
scftool <toolname> <tool parameters>
OPTIONS
Available tools:
convert
Cuts the given range out of an SCF file and makes a new SCF out of it.
To get help more specific help please type scftool convert
cut Cuts a given range of a SCF file into a new SCF file.
remix Combines trace information of a SCF file with new bases, qualities and peak values
(either in FASTA or PHD format) into a new SCF file.
EXAMPLES
Example for cut:
scftool cut infile lower_base_bound upper_base_bound outfile
Usage of remix (when using PHD files as input for bases, quals and peaks):
scftool remix scf_infile phd_infile scf_outfile
Usage of remix (when using FASTA files as input for bases, quals and peaks):
scftool remix scf_infile bases_infile quals_infile peaks_infile scf_outfile
Use scftool online using onworks.net services
