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stranslate - Online in the Cloud

Run stranslate in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command stranslate that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


stranslate - translate a nucleic acid sequence to protein ORFs

SYNOPSIS


stranslate [-options] <seqfile>

DESCRIPTION


This manual page documents briefly the stranslate command.

stranslate is a program that creates a file of all possible protein ORFs, given an input
nucleic acid sequence.

OPTIONS


Available options:

-a Translate in full, with stops; no individual ORFs.

-h Help; show brief usage and version info.

-l <minlen>
Report only ORFs greater than minlen (default 20).

-m Require ORFs to start with AUG/Met.

-o <outfile>
Save results in output file.

-q Quiet; silence banner, for piping or redirection.

-s <stopchar>
With -a, set stop character to <stopchar>.

--tetrahymena
Use the Tetrahymena/Oxytricha genetic code.

--watson
Only do the top strand (frames 0/1/2).

--crick
Only do the bottom strand (frames 3/4/5).

NOTE TO DEBIAN USERS


The original program name is translate. It was renamed to stranslate to avoid conflict
with another program of the same name.

Use stranslate online using onworks.net services


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