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weight - Online in the Cloud

Run weight in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command weight that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


weight - calculates sequence weights for an alignment

SYNOPSIS


weight [-options] <alignment file>

DESCRIPTION


This manual page documents briefly the weight command.

weight is a program that calculates weights for a sequence alignment.

OPTIONS


Available options:

-b <f> Use BLOSUM weighting scheme at <f> fractional identity.

-f <f> Filter out seqs w/ fractional ident > <x> [0-1].

-h Help; print version and usage info.

-o <file>
Save weight-annotated alignment in <outfile>.

-p Use position based weight scheme (Henikoff & Henikoff).

-s <n> Sample <n> sequences at random into a new alignment.

-v Use Voronoi weight scheme (Sibbald & Argos).

--informat <s>
Specify alignment file format <s>.
Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP.

--quiet
Suppress verbose banner.

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