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xtractore - Online in the Cloud

Run xtractore in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command xtractore that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


xtractore - extract sequences corresponding to annotated features from the given sequence
file

SYNOPSIS


xtractore [options] features.gff3 sequences.fasta

DESCRIPTION


Options:

-d|--debug
print debugging output

-h|--help
print this help message and exit

-i|--idfile: FILE
file containing a list of feature IDs (1 per line with no spaces); if provided,
only features with IDs in this file will be extracted

-o|--outfile: FILE
file to which output sequences will be written; default is terminal (stdout)

-t|--type: STRING
feature type to extract; can be used multiple times to extract features of multiple
types

-v|--version
print version number and exit

-V|--verbose
print verbose warning and error messages

-w|--width: INT
width of each line of sequence in the Fasta output; default is 80; set to 0 for no
formatting

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