This is the Linux app named AmpliMethProfiler whose latest release can be downloaded as AmpliMethProfiler_1.2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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DESCRIPTIONampliMethProfiler tool provides an easy and user friendly way to extract and analyze the epihaplotype composition of reads from targeted bisulfite sequencing experiments.
Specifically, ampliMethProfiler provides an easy and user friendly way to extract and analyze the epiallelic composition of reads from targeted bisulfite sequencing experiments. ampliMethProfiler is written in python language and requires a local installation of BLAST and QIIME tools. It can be run on Linux and OS X platforms.
HOW TO CITE US:
"ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons". Scala G., et al. BMC Bioinformatics (2016) 17:484,
This is an application that can also be fetched from https://sourceforge.net/projects/amplimethprofiler/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.