This is the Linux app named BayesRate to run in Linux online whose latest release can be downloaded as BayesRate1.65.zip. It can be run online in the free hosting provider OnWorks for workstations.
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BayesRate to run in Linux online
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DESCRIPTION
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework.The methods are described in:
Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311
Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175.
Features
- Since version 1.64 BayesRate requires Dendropy v. 4 (v. 3 no longer supported)
- Since version 1.3, Python library DendroPy is required instead of rpy2
- Added BiSSE-BMA since version 1.5 (Silvestro et al. 2013; DOI: 10.1111/evo.12236)
Programming Language
Python, S/R
This is an application that can also be fetched from https://sourceforge.net/projects/bayesrate/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
