This is the Linux app named CRUMp to run in Linux online whose latest release can be downloaded as crump-0.2.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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CRUMp to run in Linux online
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DESCRIPTION
CRUMp is based on a kernel-based learning method called Classification Relevance Units Machine (CRUM). Given an input set of protein sequences in FASTA format, the system outputs the position, residue type (S, T, or Y), and the estimated probability of each tested site being phosphorylatable.Latest downloadable files:
- crump-0.2.0.tar.gz: CRUMp GNU Octave package
- crump-0.2.0.zip: CRUMp MATLAB script
- crumptestset.fasta: A testing dataset in FASTA format. The sequence headers list the accession number of the protein sequence and the position numbers of known phosphorylation sites. Note that CRUMp may predict additional phosphorylation sites that have not been experimentally verified yet.
The testing dataset is from Biswas et al. 2010, http://www.biomedcentral.com/1471-2105/11/273/additional.
Audience
Science/Research
Programming Language
MATLAB
This is an application that can also be fetched from https://sourceforge.net/projects/crump/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
