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FishingCNV download for Linux

Free download FishingCNV Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named FishingCNV whose latest release can be downloaded as FishingCNV_1.5.3.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named FishingCNV with OnWorks for free.

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- 1. Downloaded this application in your PC.

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- 3. Upload this application in such filemanager.

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- 6. Download the application, install it and run it.

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FishingCNV


DESCRIPTION

FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs.

The program comes in 2 different releases
* GUI version (FishingCNV_X.X.X.zip)
* Command line version (FishingCNV_X.X_pipeline)

Browse through our files to find the different releases.



Features

  • Graphical User Interface
  • CNV analysis for matched test/control (e.g. cancer/tumor)
  • CNV analysis for non-matched samples
  • Batch-effect removal within the control set
  • Tab-delimited output can be viewed in Excel
  • Additional output file can be visualized in IGV
  • Distribution plots and outlier plots for each chromosome


Audience

Science/Research, Education


User interface

Java Swing


Programming Language

Java, S/R


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/fishingcnv/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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