This is the Linux app named MarDRe whose latest release can be downloaded as MarDRe-v1.4.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MarDRe
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DESCRIPTION
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset.
MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems. Instead, MarDRe takes advantage of the MapReduce programming model to significantly improve ParDRe performance on distributed systems, especially on cloud-based infrastructures. Written in pure Java to maximize cross-platform compatibility, MarDRe is built upon the open-source Apache Hadoop project, the most popular distributed computing framework for Big Data processing.
Audience
Information Technology, Healthcare Industry, Science/Research
User interface
Console/Terminal, Command-line
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mardre/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
