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MDcons(Molecular Dynamics consensus) to run in Linux o

Free download MDcons(Molecular Dynamics consensus)     to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named MDcons(Molecular Dynamics consensus) to run in Linux online whose latest release can be downloaded as mdcons-src-2.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named MDcons(Molecular Dynamics consensus) to run in Linux online with OnWorks for free.

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MDcons(Molecular Dynamics consensus) to run in Linux online


DESCRIPTION

MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.

Features

  • MDcons runs on 2000+ MD snapshots in less than 2 minutes
  • MDcons handles both Protein, RNA and DNA complexes
  • MDcons handles trajectories/snapshots with or without chain identifyer
  • MDcons is compatible with GROMACS


Audience

Science/Research


User interface

Console/Terminal, Command-line


Programming Language

Fortran, Python



This is an application that can also be fetched from https://sourceforge.net/projects/mdcons/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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