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MPICorMat download for Linux

Free download MPICorMat Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named MPICorMat whose latest release can be downloaded as MPICorMat_v3.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named MPICorMat with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

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- 6. Download the application, install it and run it.

MPICorMat


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DESCRIPTION

MPICorMat is a parallel tool to construct correlation similarity matrices as part of the procedure to generate gene co-expression networks. This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of the first module of the RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). RMTGeneNet users can exchange this CCM module by MPICorMat, benefit from its fast computation to generate the similarity
matrix, and then use the similarity matrix as input for the second module (RMM) to
construct the final gene co-expression network.



Audience

Information Technology, Healthcare Industry, Science/Research


User interface

Console/Terminal, Command-line


Programming Language

C++


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/mpicormat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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