This is the Linux app named PBSuite to run in Linux online whose latest release can be downloaded as PBSuite_15.8.24.tgz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named PBSuite to run in Linux online with OnWorks for free.
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- 1. Downloaded this application in your PC.
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SCREENSHOTS
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PBSuite to run in Linux online
DESCRIPTION
This currently hosts two projects created and maintained by Adam English.PBJelly - the genome upgrading tool.
PBHoney - the structural variation discovery tool
Both are contained within the PBSuite code found in downloads.
----- PBJelly -----
Read The Paper
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768
PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.
----- PBHoney -----
Read The Paper
http://www.biomedcentral.com/1471-2105/15/180/abstract
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.
Features
- Genome Assembly
- Genome Upgrade
- Structural Variation
- Assembly Evaluation
Audience
Science/Research
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/pb-jelly/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
