This is the Linux app named PPSeq: Parallel NGS Analysis to run in Linux online whose latest release can be downloaded as ppseq-1.3-Linux-x86_64-pthread.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named PPSeq: Parallel NGS Analysis to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
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PPSeq: Parallel NGS Analysis to run in Linux online
DESCRIPTION
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.Features
- ppalgn - aligning sequencing reads to long reference sequences
- ppbwt - building a FM-index from a set of DNA sequences
Audience
Education, Engineering, Healthcare Industry, Information Technology, Non-Profit Organizations, Science/Research
User interface
Command-line
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/ppseq/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
