This is the Linux app named Seqshell whose latest release can be downloaded as start.jar. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named Seqshell with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 3. Upload this application in such filemanager.
- 6. Download the application, install it and run it.
Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system.
By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines.
Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders.
An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs)
Run-time information will be displayed in a JAVA output window.
Developers, End Users/Desktop
This is an application that can also be fetched from https://sourceforge.net/projects/seqshell/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.