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Virus to run in Linux online download for Linux

Free download Virus to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named Virus to run in Linux online whose latest release can be downloaded as Qspp_v1.zip. It can be run online in the free hosting provider OnWorks for workstations.

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Virus to run in Linux online


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DESCRIPTION

Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files.

Features

  • Simulates Picornavirus replication error and copy-choice recombination
  • Represents genotypes, cell populations, and quasispecies cloud
  • Allows user control of parameters: MOI, replication error rate, recombination rate, generational growth rate, burst size, number of passages, number of cells, fitness acceleration, Mahoney mutational synergy
  • Reports population diversity, average fitness, neurovirulence, Mahoney resemblence


Audience

Science/Research, Education, Advanced End Users, Developers



Programming Language

Python, C++



This is an application that can also be fetched from https://sourceforge.net/projects/qspp-modeling/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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