This is the Windows app named FamSeq to run in Windows online over Linux online whose latest release can be downloaded as FamSeq1.0.2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named FamSeq to run in Windows online over Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 3. Upload this application in such filemanager.
- 4. Start any OS OnWorks online emulator from this website, but better Windows online emulator.
- 6. Download the application and install it.
FamSeq to run in Windows online over Linux online
DESCRIPTIONIt is still challenging to call rare variants. In family-based sequencing studies, information from all family members should be utilized to more accurately identify new germline mutations. FamSeq serves this purpose by providing the probability of an individual carrying a variant given his/her entire family’s raw measurements. FamSeq accommodates de novo mutations and can perform variant calling at chromosome X.
To accommodate variations in data complexity, FamSeq consists of three distinct implementations of the Mendelian genetic model: the Bayesian network algorithm, Elston-Stewart algorithm and Markov chain Monte Carlo algorithm. To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit.
This is an application that can also be fetched from https://sourceforge.net/projects/famseq/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.