This is the Windows app named PANDA whose latest release can be downloaded as PANDA_x64_v1.2.3.zip. It can be run online in the free hosting provider OnWorks for workstations.
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PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel.
- High accuracy
- High sensitivity
Science/Research, End Users/Desktop
C#, C++, S/R
This is an application that can also be fetched from https://sourceforge.net/projects/panda-tools/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.