ืื ื’ืœื™ืชืฆืจืคืชื™ืชืกืคืจื“ื™

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ืกืžืœ OnWorks

libscane - ืžืงื•ื•ืŸ ื‘ืขื ืŸ

ื”ืคืขืœ ืืช libscane ื‘ืกืคืง ืื™ืจื•ื— ื‘ื—ื™ื ื ืฉืœ OnWorks ืขืœ ืื•ื‘ื•ื ื˜ื• ืžืงื•ื•ืŸ, ืคื“ื•ืจื” ืžืงื•ื•ืŸ, ืืžื•ืœื˜ื•ืจ ืžืงื•ื•ืŸ ืฉืœ Windows ืื• ืืžื•ืœื˜ื•ืจ ืžืงื•ื•ืŸ ืฉืœ MAC OS

ื–ื•ื”ื™ ื”ืคืงื•ื“ื” libscane ืฉื ื™ืชืŸ ืœื”ืจื™ืฅ ื‘ืกืคืง ื”ืื™ืจื•ื— ื”ื—ื™ื ืžื™ ืฉืœ OnWorks ื‘ืืžืฆืขื•ืช ืื—ืช ืžืชื—ื ื•ืช ื”ืขื‘ื•ื“ื” ื”ืžืงื•ื•ื ื•ืช ื”ืžืจื•ื‘ื•ืช ืฉืœื ื•, ื›ื’ื•ืŸ Ubuntu Online, Fedora Online, ืืžื•ืœื˜ื•ืจ ืžืงื•ื•ืŸ ืฉืœ Windows ืื• ืืžื•ืœื˜ื•ืจ ืžืงื•ื•ืŸ ืฉืœ MAC OS

ืชึธื›ึฐื ึดื™ืช:

ืฉืึตื


libscan - ื—ื™ืคื•ืฉื™ื ืื‘ื—ื•ื ื™ื ืœืžืฉืคื—ื•ืช ื—ืœื‘ื•ื ื™ื.

ืชึทืงืฆึดื™ืจ


libscan -ืžืฆื‘ ืจืฉื™ืžื” -ืœืชืคื•ืก ื‘ื•ืœื™ืื ื™ -ื”ื ื™ืง ื‘ื•ืœื™ืื ื™ -ื”ืžืž ื‘ื•ืœื™ืื ื™ -ืกืื ื‘ื•ืœื™ืื ื™ -pssm ื‘ื•ืœื™ืื ื™
-ืกื™ื’ ื‘ื•ืœื™ืื ื™ -ื”ืžืžืคืช ืžื—ืจื•ื–ืช -hmextn ืžื—ืจื•ื–ืช -ื”ืžoutpath ืžื—ืจื•ื–ืช -hmmoutextn ืžื—ืจื•ื–ืช
-ืกืžืคื˜ ืžื—ืจื•ื–ืช -samextn ืžื—ืจื•ื–ืช -samoutpath ืžื—ืจื•ื–ืช -samoutextn ืžื—ืจื•ื–ืช
-pssmpath ืžื—ืจื•ื–ืช -pssmextn ืžื—ืจื•ื–ืช -ื ื™ื˜ืจ ืžืกืคืจ ืฉืœื -ืœึธื“ื•ึผืฉื ืœืฆื•ืฃ -ืžืงืกื™ืžื•ื ืžืกืคืจ ืฉืœื
-pssoutpath ืžื—ืจื•ื–ืช -psmoutextn ืžื—ืจื•ื–ืช -gbvpath ืžื—ืจื•ื–ืช -gbvextn ืžื—ืจื•ื–ืช
-gbvgapo ืœืฆื•ืฃ -gbvgape ืœืฆื•ืฃ -gbvoutpath ืžื—ืจื•ื–ืช -gbvoutextn ืžื—ืจื•ื–ืช
-hnfpath ืžื—ืจื•ื–ืช -hnfextn ืžื—ืจื•ื–ืช -hnfgapo ืœืฆื•ืฃ -hnfgape ืœืฆื•ืฃ -hnfoutpath ืžื—ืจื•ื–ืช
-hnfoutextn ืžื—ืจื•ื–ืช -ืกื™ื’ืคืช ืžื—ืจื•ื–ืช -sigextn ืžื—ืจื•ื–ืช -nterm ืจืฉื™ืžื” -ืชึทืช matrixf
-ืกื™ื’ืืคื• ืœืฆื•ืฃ -ืกื™ื™ื’ืืค ืœืฆื•ืฃ -ืกื™ื’outpath ืžื—ืจื•ื–ืช -sigoutextn ืžื—ืจื•ื–ืช -db seqset
-ืกืงื•ืค ื‘ืงื•ื‘ืฅ

libscan ืขื–ืจื”

ืชื™ืื•ืจ


libscan ื”ื™ื ืชื•ื›ื ื™ืช ืฉื•ืจืช ืคืงื•ื“ื” ืžื‘ื™ืช EMBOSS ("ื”ืื™ืจื•ืคื” ืžื•ืœืงื•ืœืจื™ืช ื‘ื™ื•ืœื•ื’ื™ื” ืคืชื•ื—ื”
ื—ื‘ื™ืœืช ืชื•ื›ื ื”"). ื–ื” ื—ืœืง ืžืงื‘ื•ืฆืช ื”ืคืงื•ื“ื•ืช "ื—ืœื‘ื•ืŸ: ืžื‘ื ื” ืชืœืช ืžื™ืžื“".

ืืคืฉืจื•ื™ื•ืช


-ืžืฆื‘ ืจืฉื™ืžื”
libscan ืคื•ืขืœ ื‘ืื—ื“ ืžืฉื ื™ ืžืฆื‘ื™ื ืื• (i) ืžืฆื‘ ื—ื™ืคื•ืฉ ืžืกื“ ื ืชื•ื ื™ื ืื• (ii) ืกืคืจื™ื™ื”
ืžืฆื‘ ืžืกืš. ื‘ืžืฆื‘ ื—ื™ืคื•ืฉ ืžืกื“ ื ืชื•ื ื™ื libscan ืงื•ืจื ืกืคืจื™ื™ื” ืื—ืช ืื• ื™ื•ืชืจ ื›ืœ ืื—ืช
ื”ืžื›ื™ืœื™ื ืกื•ื’ ื™ื—ื™ื“ ืฉืœ ืืœืžื ื˜ ืžืคืœื”, ื”ืกื•ื’ื™ื ื”ืžื•ืชืจื™ื ื“ืœื™ืœื™ื
ื—ืชื™ืžืช ืจืฆืฃ, ืคืจื•ืคื™ืœ ื’ืจื™ื‘ืกืงื•ื‘, ืคืจื•ืคื™ืœ ื”ื ื™ืงื•ืฃ ืื• ื“ื’ื ืžืจืงื•ื‘ ื ืกืชืจ. ื‘
ืžืฆื‘ ืžืกืš ืกืคืจื™ื™ื”, libscan ืงื•ืจื ืขืจื›ืช ืจืฆืฃ, ืžืกื ืŸ ื›ืœ ืจืฆืฃ ืžื•ืœ ื”-
ืกืคืจื™ื” (ืกืคืจื™ื•ืช ืฉืœ ืืœืžื ื˜ื™ื ืžื‘ื—ื ื™ื) ื•ื›ื•ืชื‘ืช ืงื•ื‘ืฅ ืกืจื™ืงืช ืกืคืจื™ื™ื” (ืฉืœ
ืžืฉืคื—ื•ืช ืขื ื”ื ื™ืงื•ื“ ื”ื’ื‘ื•ื” ื‘ื™ื•ืชืจ) ืขื‘ื•ืจ ื›ืœ ืื—ืช. ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 2

-ืœืชืคื•ืก ื‘ื•ืœื™ืื ื™
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: N

-ื”ื ื™ืง ื‘ื•ืœื™ืื ื™
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: N

-ื”ืžืž ื‘ื•ืœื™ืื ื™
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: N

-ืกืื ื‘ื•ืœื™ืื ื™
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: N

-pssm ื‘ื•ืœื™ืื ื™
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: Y

-ืกื™ื’ ื‘ื•ืœื™ืื ื™
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: N

-ื”ืžืžืคืช ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./lib/

-hmextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .hmm

-ื”ืžoutpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-hmmoutextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .hmmout

-ืกืžืคื˜ ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-samextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .mod

-samoutpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-samoutextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .samout

-pssmpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: /data/structure/lib/pssm/

-pssmextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .chk

-ื ื™ื˜ืจ ืžืกืคืจ ืฉืœื
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 1

-ืœึธื“ื•ึผืฉื ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 100

-ืžืงืกื™ืžื•ื ืžืกืคืจ ืฉืœื
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 1000

-pssoutpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-psmoutextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .pssmut

-gbvpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-gbvextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .grib

-gbvgapo ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 10.0

-gbvgape ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 0.5

-gbvoutpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-gbvoutextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .gribout

-hnfpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-hnfextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .henik

-hnfgapo ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 10.0

-hnfgape ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 0.5

-hnfoutpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-hnfoutextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .henikout

-ืกื™ื’ืคืช ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-sigextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .sig

-nterm ืจืฉื™ืžื”
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 1

-ืชึทืช matrixf
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: EBLOSUM62

-ืกื™ื’ืืคื• ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 10.0

-ืกื™ื™ื’ืืค ืœืฆื•ืฃ
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 0.5

-ืกื™ื’outpath ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: ./

-sigoutextn ืžื—ืจื•ื–ืช
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: .sigout

-db seqset
ื‘ืžืฆื‘ ื—ื™ืคื•ืฉ ืžืกื“ ื ืชื•ื ื™ื libscan ืกื•ืจืงืช ื›ืœ ืืœืžื ื˜ ืžื‘ื—ื™ืŸ ื›ื ื’ื“ ืจืฆืฃ
ืžึทืขึฒืจึถื›ึถืช. ื‘ืžืฆื‘ ืžืกืš ืกืคืจื™ื™ื”, libscan ืงื•ืจื ืขืจื›ืช ืจืฆืฃ ื•ืžืกืš ื›ืœ ืจืฆืฃ
ื ื’ื“ ื”ืกืคืจื™ื™ื” (ืกืคืจื™ื•ืช ืฉืœ ืืœืžื ื˜ื™ื ืžื‘ื“ืœื™ื) ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: 49142.vdhf

-ืกืงื•ืค ื‘ืงื•ื‘ืฅ
ื‘ื›ืœ ืžืฆื‘, 'ืงื•ื‘ืฅ ืกื™ื•ื•ื’ scop' ื ื“ืจืฉ ื›ืžืงื•ืจ ืœืžืฉืคื—ื”
ื ืชื•ื ื™ ืกื™ื•ื•ื’. ืงื•ื‘ืฅ ืกื™ื•ื•ื’ scop ืžื›ื™ืœ ืกื™ื•ื•ื’ ื•ื ืชื•ื ื™ื ืื—ืจื™ื
ืขื‘ื•ืจ ื“ื•ืžื™ื™ื ื™ื ืžืžืกื“ ื”ื ืชื•ื ื™ื scop. ื”ืงื•ื‘ืฅ ื”ื•ื ื‘ืคื•ืจืžื˜ ื“ืžื•ื™ embl ื•ื”ื•ื ื ื•ืฆืจ
ืขืœ ื™ื“ื™ scopparse. ื ื™ืชืŸ ืœื”ื•ืกื™ืฃ ืžื™ื“ืข ืขืœ ืจืฆืฃ ืชื—ื•ื ืœืงื•ื‘ืฅ ื‘ืืžืฆืขื•ืช scopseqs.
ืขืจืš ื‘ืจื™ืจืช ืžื—ื“ืœ: /data/structure/dcf/scop_raw.dcf

ื”ืฉืชืžืฉ ื‘-libscane ื‘ืื™ื ื˜ืจื ื˜ ื‘ืืžืฆืขื•ืช ืฉื™ืจื•ืชื™ onworks.net


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    Alt-F
    Alt-F
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  • ืขื•ื“ ยป

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