EnglishFrenchSpanish

OnWorks favicon

asnval - Online in the Cloud

Run asnval in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command asnval that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


asnval - validate ASN.1 biological sequence records

SYNOPSIS


asnval [-] [-A] [-B] [-C N] [-D] [-E str] [-F] [-G] [-J] [-K] [-L filename] [-M]
[-N flags] [-P N] [-Q N] [-R N] [-S N] [-T] [-U] [-X] [-Y] [-Z] [-a type] [-b] [-c]
[-d path] [-e] [-f str] [-i filename] [-k] [-l] [-o filename] [-p path] [-q] [-r] [-u]
[-v N] [-x str]

DESCRIPTION


asnval is a command-line tool to validate ASN.1-format biological sequence records.

OPTIONS


A summary of options is included below.

- Print usage message

-A Validate Alignments

-B Validate Barcodes

-C N Max count

-D Disable message suppression

-E str Only Error Code to Show

-F Test network access

-G GI lookup from accession

-J Require ISO-JTA?

-K Summary to error file

-L filename
Log File

-M Match locus_tag against General ID

-N flags
Latitude-longitude / country flags
0 none
1 test state/province
2 ignore water exception
3 both of the above

-P N Highest severity for error to show:
0 none
1 informational
2 warning
3 error (default for -Q)
4 grounds for rejection (default for -P, -R)

-Q N Lowest severity for error to show, per P

-R N Severity for error in return code, per P

-S N Skip count

-T Use Threads

-U Genome center submission

-X Exon splice check

-Y Check against old IDs

-Z Remote CDS product fetch

-a type
Input ASN.1 type:
a Automatic (default)
c Catenated
z Any
e seq-Entry
b Bioseq
s bioseq-Set
m seq-subMit
t baTch bioseq-set
u batch seq-sUbmit

-b Batch file is Binary

-c Batch file is Compressed

-d path
Path to Indexed Binary ASN.1 Data

-e Ignore transcription/translation Exceptions

-x str Substring filter

-i filename
Single input file (standard input by default)

-k Local fetching

-l Lock components in advance

-o filename
Single output file

-p path
Path to ASN.1 Files

-q Taxonomy lookup

-r Remote Fetching from ID

-u Recurse

-v N Verbosity:
1 Standard report (default)
2 Accession / severity / code (space delimited)
3 Accession / severity / code (tab delimited)
4 XML report
5 Accession / GI / severity / code (tab delimited)

-x str File selection substring (.ent by default)

Use asnval online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    OfficeFloor
    OfficeFloor
    OfficeFloor provides inversion of
    coupling control, with its: - dependency
    injection - continuation injection -
    thread injection For more information
    visit the...
    Download OfficeFloor
  • 2
    DivKit
    DivKit
    DivKit is an open source Server-Driven
    UI (SDUI) framework. It allows you to
    roll out server-sourced updates to
    different app versions. Also, it can be
    used fo...
    Download DivKit
  • 3
    subconverter
    subconverter
    Utility to convert between various
    subscription format. Shadowrocket users
    should use ss, ssr or v2ray as target.
    You can add &remark= to
    Telegram-liked HT...
    Download subconverter
  • 4
    SWASH
    SWASH
    SWASH is a general-purpose numerical
    tool for simulating unsteady,
    non-hydrostatic, free-surface,
    rotational flow and transport phenomena
    in coastal waters as ...
    Download SWASH
  • 5
    VBA-M (Archived - Now on Github)
    VBA-M (Archived - Now on Github)
    Project has moved to
    https://github.com/visualboyadvance-m/visualboyadvance-m
    Features:Cheat creationsave statesmulti
    system, supports gba, gbc, gb, sgb,
    sgb2Tu...
    Download VBA-M (Archived - Now on Github)
  • 6
    Stacer
    Stacer
    Linux System Optimizer and Monitoring
    Github Repository:
    https://github.com/oguzhaninan/Stacer.
    Audience: End Users/Desktop. User
    interface: Qt. Programming La...
    Download Stacer
  • More »

Linux commands

Ad