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br_biofetch - Online in the Cloud

Run br_biofetch in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command br_biofetch that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


br_biofetch.rb — biofetch client

SYNOPSIS


br_biofetch.rb [-s server] [db] [id] [style] [format]

DESCRIPTION


This manual page documents briefly the br_biofetch.rb.

br_biofetch.rb is a very simple biofetch client. You can connect to a biofetch server and
retrieve database entries including sequence information.

OPTIONS


-s Specify the URL of the BioFetch CGI (default is http://bioruby.org/cgi-
bin/biofetch.rb)

-e Use the EBI server at http://www.ebi.ac.uk/cgi-bin/dbfetch

-r Use the BioRuby server at http://bioruby.org/cgi-bin/biofetch.rb

db Database name. This includes options like refseq, genbank, embl, swissprot, etc.
This option depends on which biofetch server you are using.

id entry id

style ´raw´ or ´html´ (default is ´raw´)

format Output format ('default, 'fasta', 'etc')

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