This is the command br_bioflat that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
br_bioflat.rb — OBDA flat file indexer
SYNOPSIS
Search:
br_bioflat.rb [--search] [options...]
br_bioflat.rb [--search] [--location DIR] [--dbname DBNAME] [options...] [KEYWORDS]
Create index:
br_bioflat.rb [--create] [--location DIR] [--dbname DBNAME] [--format
genbank|embl|fasta] [options...] [--files FILES...]
Update index:
br_bioflat.rb [--update] [--location DIR] [--dbname DBNAME] [options...] [--files
FILES...]
Show namespaces:
br_bioflat.rb [--show-namespaces] [--location DIR] [--dbname DBNAME] [DIR/DBNAME]
br_bioflat.rb [--show-namespaces] [--format=CLASS]
br_bioflat.rb [--show-namespaces] [--files file]
DESCRIPTION
This manual page documents briefly the br_bioflat.rb.
br_bioflat.rb is an OBDA flat file indexer.
OPTIONS
--search Search a database for keywords.
--namespace --name
Only valid with the --search option. Set the search namespace. You can set this
option multiple times to specify more than one namespace.
--create Create an index.
--location
Specify the directory.
--dbname Specify the name of the database.
--primary --secondary
Set the primary and secondarynamespace of the index. Default primary/secondary
namespaces depend on the format of the flatfiles. Only valid with the --create
option.
--add-secondary
Add secondary namespaces to the default specification. You can use this option
many times. Only valid with the --create option.
--update Update an index
--sort Sort an index. You can set this to a path to an external sorting program, or
BUILTIN to use the builtin sort module. This option is only valid with --create
(or --update) and --type flat options.
--renew Re-read all flatfiles and update whole index. This option is only valid with the
--update option.
--show-namespaces
Display the namespaces for an index file.
Use br_bioflat online using onworks.net services
