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cmtk-statistics - Online in the Cloud

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PROGRAM:

NAME


statistics - Image statistics

SYNOPSIS


statistics [options] ImageFile0 [ImageFile1 ...]

DESCRIPTION


Statistical computations on image pixel intensities, i.e., means and standard deviations

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--label, -l
Interpret voxel values as labels

--gray, -g
Interpret voxel values as gray values (default) [This is the default]

--log, -L
Apply log() function to data

--exp, -e
Apply exp() function to data

--num-bins <integer>, -n <integer>
Number of histogram bins. [Default: 256]

--column, -C
Write statistics in column format rather than line format.

--e-notation, -E
Write floating point numbers in #e# notation (i.e., 1e-3 instead of 0.001)

--mask <string>, -m <string>
Analyze region based on binary mask file [Default: disabled]

--Mask <string>, -M <string>
Analyze regions separately based on mask file (label field). [Default: NONE]

--mask-output-all-up-to <integer>
Output results for all mask values up to given value, even such that do not actually
appear in the mask. [Default: 0]

--percentile <double>, -p <double>
Add value to list of percentile to compute.

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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