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dotmatchere - Online in the Cloud

Run dotmatchere in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command dotmatchere that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


dotmatcher - Draw a threshold dotplot of two sequences

SYNOPSIS


dotmatcher -asequence sequence -bsequence sequence [-matrixfile matrix]
[-windowsize integer] [-threshold integer] -stretch toggle -graph graph
-xygraph xygraph

dotmatcher -help

DESCRIPTION


dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Dot plots" command group(s).

OPTIONS


Input section
-asequence sequence

-bsequence sequence

-matrixfile matrix
This is the scoring matrix file used when comparing sequences. By default it is the
file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These
files are found in the 'data' directory of the EMBOSS installation.

Additional section
-windowsize integer
Default value: 10

-threshold integer
Default value: 23

Output section
-stretch toggle
Display a non-proportional graph Default value: N

-graph graph

-xygraph xygraph

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