This is the command dotmatchere that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
dotmatcher - Draw a threshold dotplot of two sequences
dotmatcher -asequence sequence -bsequence sequence [-matrixfile matrix]
[-windowsize integer] [-threshold integer] -stretch toggle -graph graph
dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Dot plots" command group(s).
This is the scoring matrix file used when comparing sequences. By default it is the
file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These
files are found in the 'data' directory of the EMBOSS installation.
Default value: 10
Default value: 23
Display a non-proportional graph Default value: N
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