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edamcleane - Online in the Cloud

Run edamcleane in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command edamcleane that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


edamclean - Validate and fix EDAM OBO ontology

SYNOPSIS


edamclean -edaminfile infile -taxdirectory directory -mode selection -edamoutfile outfile
-logfile outfile -xmlfile outfile -xmloutdir outdir

edamclean -help

DESCRIPTION


edamclean is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Ontology:EDAM" command group(s).

OPTIONS


Input section
-edaminfile infile
Default value: /homes/jison/edam/EDAM.obo

-taxdirectory directory

Required section
-mode selection
Default value: Report only

Advanced section
Output section
-edamoutfile outfile
Default value: EDAM_out.obo

-logfile outfile
Default value: EDAM_out.log

-xmlfile outfile
Default value: EDAM_out.xml

-xmloutdir outdir

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