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extractseqe - Online in the Cloud

Run extractseqe in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command extractseqe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


extractseq - Extract regions from a sequence

SYNOPSIS


extractseq -sequence sequence -regions range [-separate boolean] -outseq seqoutall

extractseq -help

DESCRIPTION


extractseq is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Edit" command group(s).

OPTIONS


Input section
-sequence sequence

Required section
-regions range
Regions to extract. A set of regions is specified by a set of pairs of positions. The
positions are integers. They are separated by any non-digit, non-alpha character.
Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888
1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)

Additional section
-separate boolean
If this is set true then each specified region is written out as a separate sequence.
The name of the sequence is created from the name of the original sequence with the
start and end positions of the range appended with underscore characters between them,
eg: XYZ region 2 to 34 is written as: XYZ_2_34 Default value: N

Output section
-outseq seqoutall

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