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gt-compreads-compress - Online in the Cloud

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This is the command gt-compreads-compress that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-compreads-compress - Generates compact encoding for fastq data.

SYNOPSIS


gt compreads compress [option ...] (-files file [...])

DESCRIPTION


-descs [yes|no]
encode descriptions (default: no)

-files
File(s) containing reads.

-name [string]
specify base name for HCR to be generated. Only mandatory, if more than one file was
given. (default: undefined)

-smap [string]
file containing alphabet description. If "-smap" is not set, dna alphabet is used.
(default: undefined)

-qrange [start end]
specify range of quality values. All values smaller or equal to the lower bound will
be converted to the lower bound. All values equal or larger than the upper bound will
be converted to the upper bound. (default: undefined)

-srate [value]
sampling rate, set to sensible default depending on sampling method (default:
undefined)

-stype [...]
type of sampling one of regular - page - none (default: page)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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