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gt-compreads-decompress - Online in the Cloud

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This is the command gt-compreads-decompress that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-compreads-decompress - Decodes a file of compressed reads.

SYNOPSIS


gt compreads decompress [option ...] (-file file)

DESCRIPTION


-v [yes|no]
be verbose (default: no)

-descs [yes|no]
enable description decoding (default: no)

-file [string]
specify base name of files containing HCR. (default: undefined)

-name [string]
specify base name for decoded hcr (suffix will be ".fastq") (default: undefined)

-smap [string]
specify file containing alphabetdescription (file must be an .al1 file). If "-smap" is
not set, dna alphabet is used. (default: undefined)

-range [start end]
decode multiple consecutive reads. If range is not specified, the entire file will be
decoded. (default: undefined)

-width [value]
set width of output, 0 disables formatting. line breaks in quality strings can cause
problems with parsers, use with care (default: 0)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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