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gt-compreads-decompress - Decodes a file of compressed reads.


gt compreads decompress [option ...] (-file file)


-v [yes|no]
be verbose (default: no)

-descs [yes|no]
enable description decoding (default: no)

-file [string]
specify base name of files containing HCR. (default: undefined)

-name [string]
specify base name for decoded hcr (suffix will be ".fastq") (default: undefined)

-smap [string]
specify file containing alphabetdescription (file must be an .al1 file). If "-smap" is
not set, dna alphabet is used. (default: undefined)

-range [start end]
decode multiple consecutive reads. If range is not specified, the entire file will be
decoded. (default: undefined)

-width [value]
set width of output, 0 disables formatting. line breaks in quality strings can cause
problems with parsers, use with care (default: 0)

display help and exit

display version information and exit


Report bugs to <[email protected]>.

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