This is the command kmc_tools-counters_subtract that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
kmc_tools-counters_subtract - calculate counters subtraction of two KMC databases
SYNOPSIS
kmc_tools counters_subtract <input1 [input1_params]> <input2 [input2_params]> <output
[output_params]>
DESCRIPTION
The output database will contain only k-mers that are present in the first input set and
have counters higher than the appropriate k-mers in the second set. For each k-mer the
counter is equal to the difference between the counter in the first set and the counter in
the second set.
OPTIONS
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
-cs<value>
maximal value of a counter
EXAMPLE
kmc - k28 file1.fastq kmers1 tmp
kmc - k28 file2.fastq kmers2 tmp
kmc_tools counters_subtract kmers1 kmers2 kmers1_kmers2_counters_subtract
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