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PROGRAM:

NAME


kmc_tools-counters_subtract - calculate counters subtraction of two KMC databases

SYNOPSIS


kmc_tools counters_subtract <input1 [input1_params]> <input2 [input2_params]> <output
[output_params]>

DESCRIPTION


The output database will contain only k-mers that are present in the first input set and
have counters higher than the appropriate k-mers in the second set. For each k-mer the
counter is equal to the difference between the counter in the first set and the counter in
the second set.

OPTIONS


For each input there are additional parameters:

-ci<value>
exclude k-mers occurring less than <value> times

-cx<value>
exclude k-mers occurring more of than <value> times

For output there are additional parameters:

-ci<value>
exclude k-mers occurring less than <value> times

-cx<value>
exclude k-mers occurring more of than <value> times

-cs<value>
maximal value of a counter

EXAMPLE


kmc - k28 file1.fastq kmers1 tmp
kmc - k28 file2.fastq kmers2 tmp
kmc_tools counters_subtract kmers1 kmers2 kmers1_kmers2_counters_subtract

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