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mia-2dmyoseries-dice - Online in the Cloud

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PROGRAM:

NAME


mia-2dmyoseries-dice - Evaluate the dice index between segmentations.

SYNOPSIS


mia-2dmyoseries-dice -i <input> [options]

DESCRIPTION


mia-2dmyoseries-dice This program is used to evaluate the per-frame dice index of
segmented regions of an image with respect to the segmentation of a reference frame from
the same series.

OPTIONS


-i --input=(input, required); string
original segmentation set

-k --skip=2
images to skip atthe bgin of the seriesimages to skip atthe bgin of the
series

-r --reference=20
reference imagereference image

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

EXAMPLE


Evaluate the dice index of segmentation set segment.set with reference 30 and skipping the
first two frames.

mia-2dmyoseries-dice -i segment.set -r 30 -k 2

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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