This is the Linux app named SeqSelector whose latest release can be downloaded as SeqSelector1.1b.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SeqSelector
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DESCRIPTION
The SeqSelector toolset is a suite of user-friendly, platform independent python scripts to facilitate selection of sequences for targeted enrichment of next-generation libraries through hybridization-based sequence capture. The scripts require no knowledge of programming, and can be applied to genome sequences of model or non-model species. We suggest a workflow in which genes of interest are first identified from previous studies and publicly available datasets of functional gene annotation. Once a list of candidate genes has been identified, their sequences are selected from the reference genome. These sequences are used as a query during a BLAST search of the unannotated genome of a non-model species, and then the corresponding sequences are returned, which can be used to design baits for hybridization-based sequence capture.
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/seqselector/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
