This is the command bp_chaos_plotp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
bp_chaos_plot - a chaos plot from DNA and RNA sequences
bp_chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT
-o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT
This scripts generates image files using GD image library to visualize nucleotide
sequences using chaos plot.
Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.
The default size of the image file is 600x400.
The sequence input can be provided using any of the three methods:
bp_chaos_plot -i filename
bp_chaos_plot < filename
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
your comments and suggestions preferably to the Bioperl mailing list. Your participation
is much appreciated.
[email protected] - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
resolution. Bug reports can be submitted via the web:
AUTHOR - Jason Stajich
Email [email protected]
This code is based on EMBOSS C code for chaos.c by Ian Longden. Included are
documentation from EMBOSS code:
Chaos produces a chaos plot. The original application is part of the ACEDB genome
database package, written by ** Richard Durbin (MRC LMB, UK) [email protected], and
Jean Thierry-Mieg (CRBM du CNRS, France) [email protected]
Use bp_chaos_plotp online using onworks.net services