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gdcmgendir - Online in the Cloud

Run gdcmgendir in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gdcmgendir that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gdcmgendir - Tool to generate a DICOMDIR file from a File-Set.

SYNOPSIS


gdcmgendir [options] file-in file-out

DESCRIPTION


PARAMETERS


file-in DICOM input filename

file-out DICOM output filename

OPTIONS


Parameters
specific options
-i --input DICOM filename or directory
-o --output DICOM filename or directory
-r --recursive recursive.
--descriptor descriptor.
--root-uid Root UID.

general options
-h --help
print this help text and exit

-v --version
print version information and exit

-V --verbose
verbose mode (warning+error).

-W --warning
warning mode, print warning information

-E --error
error mode, print error information

-D --debug
debug mode, print debug information

environment variable
GDCM_ROOT_UID Root UID

TYPICAL USAGE


NOTE


One may have to run some preliminary steps in order to get gdcmgendir to generate the
DICOMDIR file. Namely two steps:

· Batch renaming of the DICOM filename into something compatible with ISO 9660 filename
convention

· Convert all DICOM file into the Explicit VR Little Endian Uncompressed
(1.2.840.10008.1.2.1)

Step 1. can be solved in a numerous way. Eg. on UNIX environment this could either be
solved using the mkisofs command line tool. Filenames should not contains any extension
since the VR CS does not allow for the '.' character. Only upper case, digit 0-9, the
space ' ' and the underscore '_' character are valid in VR CS, with a maximum of 8 bytes.
Another simple tool that can be handy is 'rename' in conjunction with 'basename'.

Step 2. can simply be achieved using the gdcmconv command line tool:

$ for i in `ls IMG*`; do gdcmconv --raw --force $i /tmp/out/$i; done

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