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PB-sQF_BacterialTyping download for Linux

Free download PB-sQF_BacterialTyping Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named PB-sQF_BacterialTyping whose latest release can be downloaded as PBsQF_Mac.zip. It can be run online in the free hosting provider OnWorks for workstations.

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PB-sQF_BacterialTyping


DESCRIPTION

Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain.
The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/).
The download included the library index, the library name and sample unknowns.



Features

  • Calculating test statistics between library and unknown k-mer frequency
  • Bacterial sequence typing
  • Windows
  • Mac


Programming Language

MATLAB


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/pb-sqf-bacterialtyping/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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