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itksnap - Online in the Cloud

Run itksnap in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command itksnap that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



itksnap - semi-automatic segmentation of structures in 3D images


itksnap [options] [grey_image]


SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic
resonance images of the brain) using active contour methods, as well as manual delineation
and image navigation. Noteworthy features are:

* Linked cursor for seamless 3D navigation

* Manual segmentation in three orthogonal planes at once

* Support for many different 3D image formats, including NIfTI

* Support for concurrent, linked viewing and segmentation of multiple images

* Limited support for color images (e.g., diffusion tensor maps)

* 3D cut-plane tool for fast post-processing of segmentation results


--grey, -g FILE
Load greyscale image FILE (optional)

--segmentation, -s FILE
Load segmentation image FILE

--labels, -l FILE
Load label description file FILE

--rgb FILE
Load RGB image FILE (as overlay if combined with -g)

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