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PROGRAM:

NAME


mia-3dlandmarks-transform - Transform 3D landmark positions.

SYNOPSIS


mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION


mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D
transformation. Note, landmark transformations do the inverse of an image transformation
(in a manner of speaking), i.e. given a transformation V(x) in an image transformation the
pixel intensity at x is set to the original intensity at V(x), while a landmark at x is
moved to V(x).

OPTIONS


-i --in-file=(input, required); io
input landmark set For supported file types see PLUGINS:3dlandmarklist/io

-o --out-file=(output, required); io
output landmark set For supported file types see PLUGINS:3dlandmarklist/io

-t --transformation=(input, required); io
transformation file For supported file types see PLUGINS:3dtransform/io

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

PLUGINS: 3dlandmarklist/io


datapool Virtual IO to and from the internal data pool

Recognized file extensions: .@

lmx IO plugin to load and store 3D landmark lists

Recognized file extensions: .lmx

PLUGINS: 3dtransform/io


bbs Binary (non-portable) serialized IO of 3D transformations

Recognized file extensions: .bbs

datapool Virtual IO to and from the internal data pool

Recognized file extensions: .@

vista Vista storage of 3D transformations

Recognized file extensions: .v, .v3dt

xml XML serialized IO of 3D transformations

Recognized file extensions: .x3dt

EXAMPLE


Transform the landmarks given in input.lmx by applyning the transfromation stored in
trans.v and store the result in output.lmx

mia-3dlandmarks-transform -i input.lmx -t trans.v -o output.lmx

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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